Glyma07g08700 - SoyBase

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Report for Sequence Feature Glyma07g08700

Feature Type:	gene_model
Chromosome:	Gm07
Start:	7247920
stop:	7252036
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g08700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G45690	AT	Annotation by Michelle Graham. TAIR10: shrunken seed protein (SSE1) \| chr2:18823465-18825601 REVERSE LENGTH=367	SoyBase	E_val: 6.00E-135	ISS
GO:0006633	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process	SoyBase	N/A	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0007031	GO-bp	Annotation by Michelle Graham. GO Biological Process: peroxisome organization	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0005789	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG4546	KOG	Peroxisomal biogenesis protein (peroxin 16)	JGI		ISS
PTHR13299	Panther	UNCHARACTERIZED	JGI		ISS
PF08610	PFAM	Peroxisomal membrane protein (Pex16)	JGI		ISS
UniRef100_I1KIJ1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KIJ1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q8S8S1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peroxisome biogenesis protein 16 n=1 Tax=Arabidopsis thaliana RepID=PEX16_ARATH	SoyBase	E_val: 3.00E-132	ISS

Expression Patterns of Glyma07g08700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g08700

Paralog	Evidence	Comments
Glyma03g02080	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g08700 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g080200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g08700

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g08700

Limit To All Plant Sequences

>Glyma07g08700.2   sequence type=transcript   gene model=Glyma07g08700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAAACCCATATTTATTTCACGCAATTTGTGTCGGAAAGTTTACATCTTGGCCAACTGGGTCGCTTCCAATACCTTCAGATTTTGGTAGGATTTCGTGCTTTTGCATAATTCGTTGAGTTTCTGAAGCTATCGAGGCTTATAAGAGATGGGTGAGGCAGAACAAAGAGTTTGTGCACTCCATGGAGTCTTTGGCCAATGGATTGACATGGCTTCTTCCTGAACGGTTTTCTGAATCAGAGATTGGACCAGAAGCAGTAACAACTATTCTGGGAATCATCACAGCTCTCAATGAACATATAATTGATACAGCTCCTAAGCAAAATATTACAGGCTCTGTCGAGCCTTATTCATTTCCTTATCCATTATGCTTATCTGCATTAAAGGATTTGGAAACATTAGTTGAAGTTGTGGCACAACAATACTATGGTGATGATAAGAAATGGAATTTCCTTGCCATTACTGAAGCAACCAAGGTACTGGTTCGGTTATCTTTGTTTCGGAAGAGTGGATATAAGATGCTGCTACAAGGAGGGGAAACACCTAATGATGAGGAGTATTCAGATAGTTTTACTTCACAACATCATATGGGCTTAAAGCCCGATGTGCATCATAGGCCTGGTTATATGAAAAACAATCTTGGTGCAAAACCAATGAATCAGGAAGGAAGAGCATTATCTGCTTTGGTTAGATTTGGAGAAAAAGCAAAGGGGTCAGATCCAGTGTGGTTACGCAGGGTTGAACACCAACAAGCAACTATGGAGCCTACAACTTCAAGGGTGGATAGACCAACACTTCTCACCATATTGTCTGAAAGGGGTCTTTGTGGGGCTCTGTTTTTTATTGGAGAAGTTCTACTTATTAGTAGACCACTTATTTATGTTTTATTTATTCGAAAATATGGTATTCGGTCATGGACCCCTTGGTTCCTTTCGCTGGCTATTGATTGCATAGGAAACAGTATTCTTTCACTCATTACATCGTCAGTGGCTGGTGGGAAGGACCGAATGTTTCATCTGTCTGCCCTAGAAAAGGATGAGGTTAAACGGCGAAAGCTGCTATTTGTTCTTTACCTAATGAGAGATCCATTTTTCAGCAAGTATACTAGGCAAAGACTTGAAAGCACGGAGAAAGTTTTGGAGCCTATTCCTGTCATAGGATTTCTCACAGCAAAACTTGTTGAACTTATAATTGGAGCTCAAACACGATACACTTACATGTCAGGATCGTGAATAAAATCCAGAACAAATGCCTAATTGCCCTCCAAGATTTTGGAAAGATAGATATTCTTACTCTTCTTCCACACTACCTGCTGTTCCAAACTTTTCAAATGATGAAGAGGTATCAAACCTGCTACTATTATGATTTAAAAATAACAAACCATTGCAAGCTTGAACTTTTCTTTTGCTTGACAATTCCAAACATAGAAGATGTTAAGCTGCAACCCATGTGTGAGACAAATTGTTTGCAAGGATAGCTACACTATCAACAACTCAGTATAAATTGGAATATTTATTTGGGAGATTTTGTTCTACTCCTATTCACAAAATAGAGGTGGGTGAGAATTACACTTGTAGTTCTGAGCATCCATTGGCAGAAGGTATATGAAGAACCATCTGAAGCATTAATGCTGCCAAAGTTGCGTATTTTTCTTTACCAGAACCAGAACTTGTAGTATTTCTTTTATTTTTTTGGTTGTGTCCATCAATACCTGTACACCAAAATTACGTATCTTATAGTTCAATGATACTGTAAACTACTCAATGTCTTTGTAATAGTCTAGTTTGGTACGAAAATTATATATAATACTTTCGTATTGGAACAAAATGTCTTTGTTTGGTGATACACTTTTACGAAATTATTCGCAAGCAATAAGCATCT

Coding sequences of Glyma07g08700

Limit To All Plant Sequences

>Glyma07g08700.1   sequence type=CDS   gene model=Glyma07g08700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTCTTTGGCCAATGGATTGACATGGCTTCTTCCTGAACGGTTTTCTGAATCAGAGATTGGACCAGAAGCAGTAACAACTATTCTGGGAATCATCACAGCTCTCAATGAACATATAATTGATACAGCTCCTAAGCAAAATATTACAGGCTCTGTCGAGCCTTATTCATTTCCTTATCCATTATGCTTATCTGCATTAAAGGATTTGGAAACATTAGTTGAAGTTGTGGCACAACAATACTATGGTGATGATAAGAAATGGAATTTCCTTGCCATTACTGAAGCAACCAAGGTACTGGTTCGGTTATCTTTGTTTCGGAAGAGTGGATATAAGATGCTGCTACAAGGAGGGGAAACACCTAATGATGAGGAGTATTCAGATAGTTTTACTTCACAACATCATATGGGCTTAAAGCCCGATGTGCATCATAGGCCTGGTTATATGAAAAACAATCTTGGTGCAAAACCAATGAATCAGGAAGGAAGAGCATTATCTGCTTTGGTTAGATTTGGAGAAAAAGCAAAGGGGTCAGATCCAGTGTGGTTACGCAGGGTTGAACACCAACAAGCAACTATGGAGCCTACAACTTCAAGGGTGGATAGACCAACACTTCTCACCATATTGTCTGAAAGGGGTCTTTGTGGGGCTCTGTTTTTTATTGGAGAAGTTCTACTTATTAGTAGACCACTTATTTATGTTTTATTTATTCGAAAATATGGTATTCGGTCATGGACCCCTTGGTTCCTTTCGCTGGCTATTGATTGCATAGGAAACAGTATTCTTTCACTCATTACATCGTCAGTGGCTGGTGGGAAGGACCGAATGTTTCATCTGTCTGCCCTAGAAAAGGATGAGGTTAAACGGCGAAAGCTGCTATTTGTTCTTTACCTAATGAGAGATCCATTTTTCAGCAAGTATACTAGGCAAAGACTTGAAAGCACGGAGAAAGTTTTGGAGCCTATTCCTGTCATAGGATTTCTCACAGCAAAACTTGTTGAACTTATAATTGGAGCTCAAACACGATACACTTACATGTCAGGATCGTGA

>Glyma07g08700.2   sequence type=CDS   gene model=Glyma07g08700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTCTTTGGCCAATGGATTGACATGGCTTCTTCCTGAACGGTTTTCTGAATCAGAGATTGGACCAGAAGCAGTAACAACTATTCTGGGAATCATCACAGCTCTCAATGAACATATAATTGATACAGCTCCTAAGCAAAATATTACAGGCTCTGTCGAGCCTTATTCATTTCCTTATCCATTATGCTTATCTGCATTAAAGGATTTGGAAACATTAGTTGAAGTTGTGGCACAACAATACTATGGTGATGATAAGAAATGGAATTTCCTTGCCATTACTGAAGCAACCAAGGTACTGGTTCGGTTATCTTTGTTTCGGAAGAGTGGATATAAGATGCTGCTACAAGGAGGGGAAACACCTAATGATGAGGAGTATTCAGATAGTTTTACTTCACAACATCATATGGGCTTAAAGCCCGATGTGCATCATAGGCCTGGTTATATGAAAAACAATCTTGGTGCAAAACCAATGAATCAGGAAGGAAGAGCATTATCTGCTTTGGTTAGATTTGGAGAAAAAGCAAAGGGGTCAGATCCAGTGTGGTTACGCAGGGTTGAACACCAACAAGCAACTATGGAGCCTACAACTTCAAGGGTGGATAGACCAACACTTCTCACCATATTGTCTGAAAGGGGTCTTTGTGGGGCTCTGTTTTTTATTGGAGAAGTTCTACTTATTAGTAGACCACTTATTTATGTTTTATTTATTCGAAAATATGGTATTCGGTCATGGACCCCTTGGTTCCTTTCGCTGGCTATTGATTGCATAGGAAACAGTATTCTTTCACTCATTACATCGTCAGTGGCTGGTGGGAAGGACCGAATGTTTCATCTGTCTGCCCTAGAAAAGGATGAGGTTAAACGGCGAAAGCTGCTATTTGTTCTTTACCTAATGAGAGATCCATTTTTCAGCAAGTATACTAGGCAAAGACTTGAAAGCACGGAGAAAGTTTTGGAGCCTATTCCTGTCATAGGATTTCTCACAGCAAAACTTGTTGAACTTATAATTGGAGCTCAAACACGATACACTTACATGTCAGGATCGTGA

Predicted protein sequences of Glyma07g08700

Limit To All Plant Sequences

>Glyma07g08700.1   sequence type=predicted peptide   gene model=Glyma07g08700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESLANGLTWLLPERFSESEIGPEAVTTILGIITALNEHIIDTAPKQNITGSVEPYSFPYPLCLSALKDLETLVEVVAQQYYGDDKKWNFLAITEATKVLVRLSLFRKSGYKMLLQGGETPNDEEYSDSFTSQHHMGLKPDVHHRPGYMKNNLGAKPMNQEGRALSALVRFGEKAKGSDPVWLRRVEHQQATMEPTTSRVDRPTLLTILSERGLCGALFFIGEVLLISRPLIYVLFIRKYGIRSWTPWFLSLAIDCIGNSILSLITSSVAGGKDRMFHLSALEKDEVKRRKLLFVLYLMRDPFFSKYTRQRLESTEKVLEPIPVIGFLTAKLVELIIGAQTRYTYMSGS*

>Glyma07g08700.2   sequence type=predicted peptide   gene model=Glyma07g08700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESLANGLTWLLPERFSESEIGPEAVTTILGIITALNEHIIDTAPKQNITGSVEPYSFPYPLCLSALKDLETLVEVVAQQYYGDDKKWNFLAITEATKVLVRLSLFRKSGYKMLLQGGETPNDEEYSDSFTSQHHMGLKPDVHHRPGYMKNNLGAKPMNQEGRALSALVRFGEKAKGSDPVWLRRVEHQQATMEPTTSRVDRPTLLTILSERGLCGALFFIGEVLLISRPLIYVLFIRKYGIRSWTPWFLSLAIDCIGNSILSLITSSVAGGKDRMFHLSALEKDEVKRRKLLFVLYLMRDPFFSKYTRQRLESTEKVLEPIPVIGFLTAKLVELIIGAQTRYTYMSGS*

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